DataValidator¶
How to validate your data for database import¶
This tool validates the data before uploading to the mitoBench database. It checks, if
- all mandatory fields are set
- all values are in correct format
- number of sequences and meta information are equal
The glossary contains a definition for each attribute: https://docs.google.com/spreadsheets/d/18BsU3wdWvpE5emqy7TUBUO5Si-m-X368D1b-E4s_n5g/edit?usp=sharing
How to run:
java -jar dataValidator_<version>.jar -i metaInfo.csv -f sequences.fasta
Output:
Report as text file. This report tells you if data can be uploaded ot not.
Note
It is also possible so set a directory (-d) containing multiple pairs of fasta and csv files instead of specifying them individually.